Author Archives: moonheadsing

PC-ORD:nMDS and R:heatmaps

PC-ORD Non-metric Multidimensional Scaling and Correlations Imported Main Matrix “MM” sheet from “PCORD_only_Base.xlsx” Imported Environmental “EM” sheet from “PCORD_only_Base.xlsx” Ran analysis: Ordination|NMS|autopilot/Slow & thorough Took about 20 min. No option to “Graph Ordination”. Graphed NMS Scree Plot. Not exactly sure … Continue reading

Posted in Keiko | Tagged , , , , | 1 Comment

Meeting with Dr. Lamendella #2

Things we figured out metadata ID names are some combination of RS number, visit etc. separated by dots. metadata after baseline is on computer at Lamendella’s house. Should receive by end of the day. Things we need to do for … Continue reading

Posted in Andrew, Keiko | Leave a comment

Getting Acquainted with Data/QIIME interface

Andrew and I met at approximate 9:27PM to start exploring the QIIME online interface and get a better feel of the data that is generated by QIIME (http://www.microbio.me/qiime/). We were able to download a .jnlp file after doing a test … Continue reading

Posted in Andrew, Keiko | Leave a comment